Variant report

Variant	rs4957731
Chromosome Location	chr5:107277826-107277827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10053821	0.95[ASN][1000 genomes]
rs10069962	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10070308	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072411	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10479417	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17371693	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17437183	1.00[CHD][hapmap]
rs17437482	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28457651	0.95[ASN][1000 genomes]
rs28520800	0.95[ASN][1000 genomes]
rs4957730	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4957734	1.00[CHD][hapmap]
rs72795980	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701221	1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7737558	1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107273600-107287800	Weak transcription	Gastric	stomach
5	chr5:107273800-107279600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
7	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:107274400-107284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
10	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:107275200-107286600	Weak transcription	Lung	lung
12	chr5:107277800-107278000	Enhancers	Pancreas	Pancrea
13	chr5:107277800-107285200	Weak transcription	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links