Variant report

Variant	rs11738072
Chromosome Location	chr5:107249816-107249817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10045437	0.87[YRI][hapmap]
rs10069962	1.00[JPT][hapmap]
rs10072706	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs17160714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs9328023	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107244600-107253000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr5:107245600-107253200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107248600-107250400	Enhancers	Dnd41	blood
4	chr5:107248600-107258600	Weak transcription	Left Ventricle	heart
5	chr5:107249000-107250400	Enhancers	Thymus	Thymus
6	chr5:107249600-107251200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:107249800-107250200	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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