Variant report

Variant	rs10074148
Chromosome Location	chr5:167337407-167337408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11951480	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12109229	0.95[ASN][1000 genomes]
rs12189098	0.82[JPT][hapmap]
rs13182072	0.82[JPT][hapmap]
rs1363204	0.82[JPT][hapmap]
rs1421982	0.82[JPT][hapmap]
rs1592800	0.82[JPT][hapmap]
rs32401	0.90[JPT][hapmap]
rs7708105	0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7710122	0.93[CEU][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7719650	0.80[CHB][hapmap]
rs7727661	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10074148	ODZ2	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167326800-167342400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167328000-167339200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:167328000-167339400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167328000-167342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167328000-167343000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167330800-167338600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167331400-167339200	Weak transcription	NHEK	skin
8	chr5:167333600-167345800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:167333800-167339600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:167333800-167343200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:167333800-167343200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:167335800-167339600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:167337200-167337600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:167337400-167337600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links