Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10074148	0.82[JPT][hapmap]
rs11134478	0.83[AFR][1000 genomes]
rs11134479	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs11738159	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11951480	0.82[JPT][hapmap]
rs12109973	0.91[CEU][hapmap]
rs12189098	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12522225	0.95[CEU][hapmap]
rs12716236	0.95[CEU][hapmap]
rs13172139	0.80[AFR][1000 genomes]
rs1363204	0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1363205	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1421979	0.81[AMR][1000 genomes]
rs1421982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421983	0.91[CEU][hapmap]
rs1421985	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1421987	0.83[AFR][1000 genomes]
rs1592800	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17069346	1.00[YRI][hapmap]
rs28547994	0.80[AFR][1000 genomes]
rs32400	1.00[YRI][hapmap]
rs4632816	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs6555773	0.95[CEU][hapmap]
rs66804094	0.82[AFR][1000 genomes]
rs67007847	0.82[AFR][1000 genomes]
rs7380412	0.95[JPT][hapmap]
rs7708105	0.82[JPT][hapmap]
rs7710122	0.82[JPT][hapmap]
rs7719650	0.95[CEU][hapmap];0.91[CHB][hapmap];0.96[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7729681	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
3	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167266600-167326200	Weak transcription	HMEC	breast
2	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167305800-167323600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167306400-167326600	Weak transcription	HSMM	muscle
5	chr5:167310600-167317600	Weak transcription	NHEK	skin
6	chr5:167310600-167323000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167312600-167325400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:167315400-167317200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr5:167316000-167317200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:167316200-167317800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:167316600-167317200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:167316600-167317600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:167316800-167318400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:167316800-167325000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:167317000-167324800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:167317000-167325000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:167317000-167325400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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