Variant report

Variant	rs7380412
Chromosome Location	chr5:167300485-167300486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1035373	0.88[CEU][hapmap]
rs12189098	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs12517071	1.00[YRI][hapmap]
rs13182072	0.95[JPT][hapmap]
rs1363204	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1363205	0.95[JPT][hapmap]
rs1363206	0.88[CEU][hapmap]
rs1421980	1.00[YRI][hapmap]
rs1421982	0.95[JPT][hapmap]
rs1592800	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17526010	1.00[YRI][hapmap]
rs2909797	0.88[CEU][hapmap]
rs2909799	0.87[CEU][hapmap]
rs6875425	1.00[YRI][hapmap]
rs7719650	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167266600-167326200	Weak transcription	HMEC	breast
2	chr5:167281800-167301600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167290200-167301600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167291800-167300800	Weak transcription	NHEK	skin
6	chr5:167296800-167303600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167298000-167311000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167299200-167303000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:167299200-167310600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:167300000-167311000	Weak transcription	Fetal Lung	lung
11	chr5:167300200-167303800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:167300200-167308600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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