Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1024970	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1035373	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1363204	0.88[CEU][hapmap]
rs1363206	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1592800	0.88[CEU][hapmap]
rs17069307	0.92[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs1963355	0.87[ASN][1000 genomes]
rs2112309	0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2909796	0.86[ASN][1000 genomes]
rs2909797	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2909800	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2909803	0.89[ASN][1000 genomes]
rs2973657	0.92[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2973658	0.83[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2973659	0.89[ASN][1000 genomes]
rs2973669	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4632816	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs60172043	0.89[ASN][1000 genomes]
rs6555775	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7380412	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167266600-167326200	Weak transcription	HMEC	breast
3	chr5:167281600-167296600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167281800-167301600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167288200-167295000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167288200-167296600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167289600-167297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:167290200-167301600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:167291800-167300800	Weak transcription	NHEK	skin
11	chr5:167292000-167299800	Weak transcription	Fetal Lung	lung
12	chr5:167294000-167295800	Enhancers	Brain Germinal Matrix	brain
13	chr5:167294200-167294800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:167294400-167294600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:167294400-167295000	Enhancers	Fetal Brain Male	brain
16	chr5:167294400-167295000	Enhancers	Fetal Brain Female	brain

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