Variant report

Variant	rs1363206
Chromosome Location	chr5:167288684-167288685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1024970	0.89[CEU][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs1035373	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1363204	0.89[CEU][hapmap]
rs1592800	0.89[CEU][hapmap]
rs17069307	0.84[CHB][hapmap];0.93[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1963355	0.95[ASN][1000 genomes]
rs2112309	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2909796	0.93[ASN][1000 genomes]
rs2909797	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2909799	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2909800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2909803	0.96[ASN][1000 genomes]
rs2973657	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2973658	0.91[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2973659	0.96[ASN][1000 genomes]
rs2973669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632816	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs60172043	0.91[ASN][1000 genomes]
rs6555775	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7380412	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
3	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
4	esv3367017	chr5:167284924-167289022	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167266600-167326200	Weak transcription	HMEC	breast
3	chr5:167280000-167289400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:167281600-167296600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167281800-167301600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:167288200-167291000	Enhancers	Brain Germinal Matrix	brain
8	chr5:167288200-167291200	Enhancers	Fetal Brain Male	brain
9	chr5:167288200-167291800	Strong transcription	NHEK	skin
10	chr5:167288200-167295000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:167288200-167296600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:167288400-167289000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:167288400-167289000	Enhancers	Colon Smooth Muscle	Colon
14	chr5:167288400-167289800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:167288600-167288800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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