Variant report

Variant	rs2973669
Chromosome Location	chr5:167293241-167293242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1024970	0.84[EUR][1000 genomes]
rs1035373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1363206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17069307	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1963355	0.95[ASN][1000 genomes]
rs2112309	0.91[ASN][1000 genomes]
rs2909796	0.93[ASN][1000 genomes]
rs2909797	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2909799	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2909800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2909803	0.96[ASN][1000 genomes]
rs2973657	0.99[ASN][1000 genomes]
rs2973658	0.96[ASN][1000 genomes]
rs2973659	0.96[ASN][1000 genomes]
rs4632816	0.92[ASN][1000 genomes]
rs60172043	0.91[ASN][1000 genomes]
rs6555775	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462511	chr5:167275087-167324809	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
2	nsv600254	chr5:167275087-167324809	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167251800-167299000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:167266600-167326200	Weak transcription	HMEC	breast
3	chr5:167281600-167296600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:167281800-167301600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:167285600-167325600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:167288200-167295000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:167288200-167296600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:167289000-167294200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:167289600-167297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:167290200-167301600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167291000-167294000	Weak transcription	Brain Germinal Matrix	brain
12	chr5:167291800-167300800	Weak transcription	NHEK	skin
13	chr5:167292000-167299800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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