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Variant report
Variant
rs10074226
Chromosome Location
chr5:160490569-160490570
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:1)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:1 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-GABRA6-1
chr5:160490534-160490680
XLOC_004622
No data
No data
No data
Extended variants information (count: 6 )
Associated traits (count: 1 )
rSNPs within LD-proxies of this variant (count:4)
rs_ID
r
2
[population]
rs17444992
0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17504106
0.80[AMR][1000 genomes]
rs383686
0.92[EUR][1000 genomes]
rs55812059
0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1026519
chr5:160145143-160785295
Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
4 gene(s)
inside rSNPs
diseases
2
nsv830533
chr5:160464698-160605045
Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS
Chromatin interactive regionlncRNA
n/a
inside rSNPs
diseases
mRNA abundance (count:1)
SNP
Gene
Cis/trans
Tissue
Source
rs10074226
CCNJL
cis
cerebellum
SCAN
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links