Variant report

Variant	rs10076358
Chromosome Location	chr5:90240281-90240282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10052400	1.00[AMR][1000 genomes]
rs10070221	1.00[AMR][1000 genomes]
rs10077340	1.00[AMR][1000 genomes]
rs10080224	1.00[AMR][1000 genomes]
rs10473940	1.00[AMR][1000 genomes]
rs13358526	1.00[AMR][1000 genomes]
rs16869402	1.00[AMR][1000 genomes]
rs28460131	1.00[AMR][1000 genomes]
rs35441996	1.00[AMR][1000 genomes]
rs6865161	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90225800-90244000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:90230400-90265200	Weak transcription	K562	blood
3	chr5:90231600-90250800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:90236600-90243400	Weak transcription	HepG2	liver
5	chr5:90236800-90263200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:90237400-90241000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:90237400-90246400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:90237600-90241600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:90237600-90241800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:90237600-90242200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:90237600-90245600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:90237800-90241600	Weak transcription	Brain Germinal Matrix	brain
13	chr5:90239200-90240600	Enhancers	NHEK	skin
14	chr5:90239400-90240400	Enhancers	A549	lung
15	chr5:90239800-90241000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:90240000-90240400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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