Variant report

Variant	rs6865161
Chromosome Location	chr5:90391304-90391305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90389673..90399904-chr5:90673387..90683638,16	K562	blood:
2	chr5:90390679..90392403-chr5:90678424..90680651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10076358	1.00[AMR][1000 genomes]
rs10080224	1.00[AMR][1000 genomes]
rs16869402	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90370600-90397600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:90380000-90391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:90385800-90397400	Weak transcription	Fetal Lung	lung
4	chr5:90386000-90391600	Weak transcription	Brain Germinal Matrix	brain
5	chr5:90386800-90400800	Weak transcription	K562	blood
6	chr5:90387000-90392400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:90387200-90392000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:90387200-90392400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:90387200-90392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:90387400-90391800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:90387800-90397600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:90389600-90392000	Weak transcription	Fetal Kidney	kidney
13	chr5:90390200-90391600	Enhancers	Fetal Heart	heart
14	chr5:90390400-90392000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr5:90390400-90392000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr5:90390600-90391800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr5:90390600-90392000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:90390800-90391800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr5:90390800-90391800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr5:90390800-90394400	Weak transcription	HSMM	muscle
21	chr5:90391000-90391400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:90391000-90391800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:90391000-90391800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:90391000-90391800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr5:90391000-90392000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr5:90391000-90392000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:90391000-90394400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:90391000-90397000	Weak transcription	A549	lung
29	chr5:90391200-90391400	Enhancers	Colon Smooth Muscle	Colon
30	chr5:90391200-90391600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:90391200-90391800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:90391200-90391800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr5:90391200-90392200	Enhancers	H1 Cell Line	embryonic stem cell
34	chr5:90391200-90392800	Enhancers	Brain Anterior Caudate	brain
35	chr5:90391200-90393200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr5:90391200-90395000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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