Variant report

Variant	rs10077132
Chromosome Location	chr5:147114443-147114444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10036585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10042877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17497858	0.97[AFR][1000 genomes]
rs17497914	0.97[AFR][1000 genomes]
rs2116770	0.94[AFR][1000 genomes]
rs28661528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3444248	chr5:147094808-147116217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3404718	chr5:147111059-147115357	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3393638	chr5:147111959-147116157	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147103600-147121800	Weak transcription	Fetal Brain Male	brain
3	chr5:147111200-147114600	Weak transcription	Stomach Mucosa	stomach
4	chr5:147111800-147126600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:147112000-147126600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:147112600-147117000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:147112600-147122800	Weak transcription	Brain Angular Gyrus	brain
8	chr5:147112800-147119000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:147113000-147119600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:147113000-147121800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:147113000-147121800	Weak transcription	Brain Germinal Matrix	brain
12	chr5:147113000-147131000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:147113400-147114600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:147113400-147118800	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:147114200-147114600	Enhancers	Primary hematopoietic stem cells	blood
16	chr5:147114200-147114800	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr5:147114200-147115000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:147114200-147116000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr5:147114400-147114600	Enhancers	Fetal Lung	lung
20	chr5:147114400-147114800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:147114400-147114800	Flanking Active TSS	Liver	Liver
22	chr5:147114400-147114800	Enhancers	Brain Anterior Caudate	brain
23	chr5:147114400-147115000	Enhancers	H1 Cell Line	embryonic stem cell
24	chr5:147114400-147115000	Enhancers	H9 Cell Line	embryonic stem cell
25	chr5:147114400-147115000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr5:147114400-147115000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr5:147114400-147115000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr5:147114400-147115000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:147114400-147115000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:147114400-147115000	Enhancers	Brain Cingulate Gyrus	brain
31	chr5:147114400-147115200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:147114400-147115400	Enhancers	Brain Substantia Nigra	brain
33	chr5:147114400-147115600	Enhancers	HUES48 Cell Line	embryonic stem cell

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