Variant report

Variant	rs10477347
Chromosome Location	chr5:147108893-147108894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147103170..147104982-chr5:147106913..147109194,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10036585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10037199	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10042877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10476888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17497858	0.97[AFR][1000 genomes]
rs17497914	0.97[AFR][1000 genomes]
rs2116770	0.94[AFR][1000 genomes]
rs28661528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3444248	chr5:147094808-147116217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147078600-147146000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:147101600-147114400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:147101800-147109800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:147102000-147109400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:147102000-147109600	Weak transcription	Brain Germinal Matrix	brain
6	chr5:147102000-147111600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:147102000-147112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:147102200-147114400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:147102600-147111600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:147103600-147110400	Weak transcription	Brain Angular Gyrus	brain
11	chr5:147103600-147110400	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:147103600-147111600	Weak transcription	Fetal Brain Female	brain
13	chr5:147103600-147121800	Weak transcription	Fetal Brain Male	brain
14	chr5:147105600-147109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:147105600-147114200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:147105800-147110400	Weak transcription	Brain Anterior Caudate	brain
17	chr5:147105800-147114400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:147106000-147110400	Weak transcription	Brain Substantia Nigra	brain
19	chr5:147106400-147110400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:147106600-147111200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:147107200-147112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:147108400-147110600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr5:147108600-147111200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:147108800-147110600	Weak transcription	Brain Cingulate Gyrus	brain

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