Variant report

Variant	rs10077152
Chromosome Location	chr5:179922218-179922219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:179920260..179922999-chr5:180038598..180040134,2	MCF-7	breast:
2	chr5:179920138..179923580-chr5:179954774..179958751,3	MCF-7	breast:
3	chr5:179778332..179781251-chr5:179920436..179923318,3	MCF-7	breast:
4	chr5:179718755..179721306-chr5:179919977..179922949,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248367	Chromatin interaction
ENSG00000131459	Chromatin interaction
ENSG00000113300	Chromatin interaction
ENSG00000037280	Chromatin interaction
ENSG00000050748	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10059433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10072835	1.00[AMR][1000 genomes]
rs13357229	1.00[AMR][1000 genomes]
rs17080355	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28522110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6872162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7723088	1.00[AMR][1000 genomes]
rs9329113	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023914	chr5:179649883-180040672	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv537983	chr5:179649883-180040672	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
4	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
6	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
7	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
8	nsv1023537	chr5:179791679-179982822	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv537985	chr5:179791679-179982822	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv1019519	chr5:179866730-179959408	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv830564	chr5:179867394-180010096	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	esv3356496	chr5:179920371-179922919	Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179920400-179922400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:179920400-179922400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr5:179920400-179922800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr5:179920400-179923000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr5:179920400-179923200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:179920400-179923400	Active TSS	GM12878-XiMat	blood
7	chr5:179920600-179922400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:179920600-179922400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:179920600-179922400	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr5:179920600-179922400	Active TSS	Brain Anterior Caudate	brain
11	chr5:179920600-179922400	Active TSS	Colon Smooth Muscle	Colon
12	chr5:179920600-179922400	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr5:179920600-179922400	Active TSS	Fetal Kidney	kidney
14	chr5:179920600-179922400	Active TSS	Placenta	Placenta
15	chr5:179920600-179922400	Active TSS	Rectal Smooth Muscle	rectum
16	chr5:179920600-179922400	Active TSS	HSMMtube	muscle
17	chr5:179920600-179922400	Active TSS	NH-A	brain
18	chr5:179920600-179922600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:179920600-179922800	Active TSS	Right Atrium	heart
20	chr5:179920600-179923000	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr5:179920600-179923200	Active TSS	H9 Cell Line	embryonic stem cell
22	chr5:179920800-179922400	Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr5:179920800-179922400	Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr5:179920800-179922400	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr5:179920800-179922400	Active TSS	Brain Germinal Matrix	brain
26	chr5:179920800-179922400	Active TSS	Brain Hippocampus Middle	brain
27	chr5:179920800-179922400	Active TSS	Fetal Muscle Trunk	muscle
28	chr5:179920800-179922400	Active TSS	Fetal Stomach	stomach
29	chr5:179920800-179922400	Active TSS	Skeletal Muscle Female	skeletal muscle
30	chr5:179920800-179922400	Active TSS	Thymus	Thymus
31	chr5:179920800-179922400	Active TSS	HSMM	muscle
32	chr5:179920800-179922600	Active TSS	HUES64 Cell Line	embryonic stem cell
33	chr5:179920800-179922800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:179920800-179923000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:179920800-179923000	Active TSS	A549	lung
36	chr5:179920800-179923200	Active TSS	NHDF-Ad	bronchial
37	chr5:179921000-179922400	Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr5:179921000-179922400	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr5:179921000-179922400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:179921000-179922400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:179921000-179922400	Active TSS	Esophagus	oesophagus
42	chr5:179921000-179922400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr5:179921000-179922400	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr5:179921000-179922400	Active TSS	Fetal Muscle Leg	muscle
45	chr5:179921000-179922400	Active TSS	Fetal Thymus	thymus
46	chr5:179921000-179922400	Active TSS	Left Ventricle	heart
47	chr5:179921000-179922400	Active TSS	Pancreas	Pancrea
48	chr5:179921000-179922400	Active TSS	Psoas Muscle	Psoas
49	chr5:179921000-179922400	Active TSS	Right Ventricle	heart
50	chr5:179921000-179922400	Active TSS	Sigmoid Colon	Sigmoid Colon

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