Variant report

Variant	rs10077421
Chromosome Location	chr5:111943728-111943729
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10057669	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077808	0.83[EUR][1000 genomes]
rs11959039	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496155	1.00[ASN][1000 genomes]
rs338840	1.00[ASN][1000 genomes]
rs6882194	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7446717	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv20349	chr5:111915807-111944317	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv819717	chr5:111935623-111947507	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv821026	chr5:111938702-111945437	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv599373	chr5:111938738-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836543	chr5:111939151-111944473	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1836690	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv1837328	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv1837524	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1837571	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1837969	chr5:111939151-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv823180	chr5:111939337-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv823182	chr5:111939479-111947460	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv16282	chr5:111939492-111944907	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv599378	chr5:111939614-111943935	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv599379	chr5:111939614-111944295	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1836004	chr5:111939614-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1838492	chr5:111939614-111944449	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv599380	chr5:111939614-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv1836219	chr5:111939614-111944473	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv1837456	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv1839406	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1839469	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1840814	chr5:111939614-111944473	Weak transcription Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1840838	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv599381	chr5:111939614-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv599383	chr5:111940021-111944295	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv599384	chr5:111940021-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv599386	chr5:111940373-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv599387	chr5:111940373-111944473	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv599388	chr5:111940667-111944449	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv1835627	chr5:111940667-111944473	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv599389	chr5:111940954-111944449	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv599390	chr5:111940954-111944473	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv599391	chr5:111941260-111944295	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv599392	chr5:111941816-111944449	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
37	nsv524230	chr5:111942769-111944473	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111941000-111952600	Weak transcription	Right Atrium	heart
2	chr5:111943200-111945200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr5:111943400-111945400	Active TSS	Fetal Intestine Large	intestine
4	chr5:111943600-111945400	Enhancers	Cortex derived primary cultured neurospheres	brain

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