Variant report

Variant	rs11959039
Chromosome Location	chr5:111960361-111960362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10057669	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077421	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496155	1.00[ASN][1000 genomes]
rs338840	1.00[ASN][1000 genomes]
rs6882194	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7446717	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:111959400-111964200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr5:111959400-111967000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:111959600-111960600	Weak transcription	Brain Germinal Matrix	brain
4	chr5:111959600-111961000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:111960200-111964000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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