Variant report

Variant	rs10077836
Chromosome Location	chr5:41263324-41263325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10058883	0.84[EUR][1000 genomes]
rs10065697	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1444904	1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41262800-41263800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:41263000-41264000	Enhancers	Ovary	ovary
3	chr5:41263000-41264400	Enhancers	Fetal Heart	heart
4	chr5:41263200-41265000	Enhancers	Duodenum Mucosa	Duodenum
5	chr5:41263200-41265000	Enhancers	Fetal Intestine Large	intestine
6	chr5:41263200-41265000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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