Variant report

Variant	rs10058883
Chromosome Location	chr5:41220990-41220991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10071904	1.00[ASN][1000 genomes]
rs10077836	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs11748237	0.98[ASN][1000 genomes]
rs12332366	0.89[ASN][1000 genomes]
rs12516670	0.93[ASN][1000 genomes]
rs12516790	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12521608	0.92[ASN][1000 genomes]
rs13436351	0.88[ASN][1000 genomes]
rs1444903	0.89[ASN][1000 genomes]
rs4145102	0.83[CHB][hapmap]
rs58840028	0.83[ASN][1000 genomes]
rs59852186	0.89[ASN][1000 genomes]
rs6892389	0.87[ASN][1000 genomes]
rs9654390	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv4808	chr5:41203254-41251985	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41219200-41221000	Enhancers	Brain Substantia Nigra	brain
2	chr5:41219600-41221000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:41219600-41223600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:41220200-41221000	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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