Variant report

Variant	rs58840028
Chromosome Location	chr5:41194345-41194346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10058883	0.83[ASN][1000 genomes]
rs10071904	0.83[ASN][1000 genomes]
rs11748237	0.81[ASN][1000 genomes]
rs12332299	0.89[AFR][1000 genomes]
rs12332366	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12516670	0.95[AFR][1000 genomes]
rs12516790	0.92[ASN][1000 genomes]
rs13436351	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1444903	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59852186	0.92[ASN][1000 genomes]
rs6892389	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9654390	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41184800-41195200	Weak transcription	Pancreas	Pancrea
2	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41186600-41195000	Weak transcription	Fetal Intestine Large	intestine
4	chr5:41192800-41196000	Enhancers	Stomach Mucosa	stomach
5	chr5:41193000-41194600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:41193000-41195200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr5:41193200-41194400	Enhancers	Fetal Lung	lung
8	chr5:41193200-41194400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr5:41193200-41194600	Enhancers	Adipose Nuclei	Adipose
10	chr5:41193400-41194600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr5:41193600-41194600	Enhancers	Fetal Heart	heart
12	chr5:41194000-41194400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr5:41194200-41194400	Flanking Active TSS	Liver	Liver
14	chr5:41194200-41195800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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