Variant report

Variant	rs11748237
Chromosome Location	chr5:41255902-41255903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10058883	0.98[ASN][1000 genomes]
rs10071904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12332366	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12516670	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12516790	0.87[ASN][1000 genomes]
rs12521608	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13436351	0.86[ASN][1000 genomes]
rs1444903	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1444904	0.81[EUR][1000 genomes]
rs4145102	0.83[CHB][hapmap]
rs58840028	0.81[ASN][1000 genomes]
rs59852186	0.87[ASN][1000 genomes]
rs6892389	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9654390	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427717	chr5:41201377-41369202	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41253600-41256800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:41255000-41262400	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links