Variant report

Variant	rs13436351
Chromosome Location	chr5:41198201-41198202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10058883	0.88[ASN][1000 genomes]
rs10071904	0.88[ASN][1000 genomes]
rs11748237	0.86[ASN][1000 genomes]
rs12332299	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12332366	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12516670	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12516790	0.97[ASN][1000 genomes]
rs12521608	0.80[ASN][1000 genomes]
rs1444903	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4145102	0.83[CHB][hapmap]
rs58840028	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59852186	0.97[ASN][1000 genomes]
rs6892389	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9654390	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965601	chr5:41198137-41204629	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13436351	PTGER4	cis	cerebellum	SCAN
rs13436351	RPL37	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41185200-41203200	Weak transcription	Fetal Intestine Small	intestine
2	chr5:41194600-41201800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:41195600-41199000	Weak transcription	Left Ventricle	heart
4	chr5:41195600-41205400	Weak transcription	Pancreas	Pancrea
5	chr5:41195800-41201400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:41196000-41200400	Genic enhancers	Liver	Liver
7	chr5:41196000-41201200	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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