Variant report

Variant	rs10078108
Chromosome Location	chr5:58366563-58366564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58363195..58365401-chr5:58365586..58367971,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10037978	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10043404	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10045258	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10058672	0.87[AMR][1000 genomes]
rs10079826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358675	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13358738	0.87[AMR][1000 genomes]
rs13359707	0.87[AMR][1000 genomes]
rs13361668	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13362242	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889181	0.87[AMR][1000 genomes]
rs16889190	0.87[AMR][1000 genomes]
rs28703107	0.87[AMR][1000 genomes]
rs28735903	0.87[AMR][1000 genomes]
rs56356290	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58178219	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59490646	0.87[AMR][1000 genomes]
rs60419833	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093303	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73093324	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7700296	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7712076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719347	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9292190	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830313	chr5:58273724-58421098	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1032308	chr5:58312468-58371239	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58336200-58375600	Weak transcription	Left Ventricle	heart
2	chr5:58360600-58373800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:58360800-58367200	Weak transcription	HepG2	liver
4	chr5:58362400-58368200	Weak transcription	Psoas Muscle	Psoas
5	chr5:58365400-58366600	Enhancers	A549	lung
6	chr5:58365400-58375200	Weak transcription	Hela-S3	cervix
7	chr5:58365600-58369000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:58366000-58368400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:58366000-58375600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:58366000-58375800	Weak transcription	Rectal Smooth Muscle	rectum

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