Variant report

Variant	rs28703107
Chromosome Location	chr5:58374778-58374779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037978	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10043404	0.87[AMR][1000 genomes]
rs10045258	0.87[AMR][1000 genomes]
rs10052007	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10058672	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074406	0.89[AMR][1000 genomes]
rs10078108	0.87[AMR][1000 genomes]
rs10079826	0.87[AMR][1000 genomes]
rs13358675	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13359707	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13361668	0.87[AMR][1000 genomes]
rs13362242	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16889181	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16889190	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28735903	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56356290	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58178219	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59490646	1.00[AMR][1000 genomes]
rs60419833	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6872107	0.87[AMR][1000 genomes]
rs6890598	0.87[AMR][1000 genomes]
rs73093303	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73093323	0.87[AMR][1000 genomes]
rs73093324	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7700296	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7712076	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7719347	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9292190	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830313	chr5:58273724-58421098	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58336200-58375600	Weak transcription	Left Ventricle	heart
2	chr5:58365400-58375200	Weak transcription	Hela-S3	cervix
3	chr5:58366000-58375600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:58366000-58375800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:58369200-58375800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:58373000-58375800	Weak transcription	Pancreas	Pancrea
7	chr5:58373400-58376000	Weak transcription	Fetal Lung	lung
8	chr5:58373600-58375600	Weak transcription	Right Atrium	heart
9	chr5:58374200-58375800	Weak transcription	A549	lung
10	chr5:58374600-58375800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:58374600-58376000	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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