Variant report

Variant	rs10078455
Chromosome Location	chr5:117613822-117613823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:117607162..117609228-chr5:117612634..117615234,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10040506	0.81[AMR][1000 genomes]
rs10042731	0.92[AMR][1000 genomes]
rs10044897	0.87[AMR][1000 genomes]
rs10056187	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057536	0.93[ASN][1000 genomes]
rs10519541	0.81[CEU][hapmap];0.92[AMR][1000 genomes]
rs1074705	0.88[AMR][1000 genomes]
rs11741705	0.89[AMR][1000 genomes]
rs11744141	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748351	0.89[AMR][1000 genomes]
rs1382729	0.89[AMR][1000 genomes]
rs1382730	0.84[AMR][1000 genomes]
rs1382731	0.89[AMR][1000 genomes]
rs1382732	0.89[AMR][1000 genomes]
rs1382733	0.89[AMR][1000 genomes]
rs1382734	0.89[AMR][1000 genomes]
rs1382735	0.89[AMR][1000 genomes]
rs1382736	0.89[AMR][1000 genomes]
rs1382737	0.92[AMR][1000 genomes]
rs1382738	0.89[AMR][1000 genomes]
rs17143923	0.82[AMR][1000 genomes]
rs1871366	0.89[AMR][1000 genomes]
rs2416509	0.82[AMR][1000 genomes]
rs28471035	0.89[AMR][1000 genomes]
rs28473044	0.92[AMR][1000 genomes]
rs28485532	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34434678	0.89[AMR][1000 genomes]
rs41456648	0.85[CEU][hapmap];0.85[AMR][1000 genomes]
rs4412141	0.92[AMR][1000 genomes]
rs4555864	0.89[AMR][1000 genomes]
rs4555865	0.92[AMR][1000 genomes]
rs4635967	0.92[AMR][1000 genomes]
rs5000371	0.89[AMR][1000 genomes]
rs5004250	0.86[AMR][1000 genomes]
rs56280351	0.83[AMR][1000 genomes]
rs60815054	0.92[AMR][1000 genomes]
rs60923242	0.87[AMR][1000 genomes]
rs61184343	0.92[AMR][1000 genomes]
rs6595103	0.88[AMR][1000 genomes]
rs6595104	0.89[AMR][1000 genomes]
rs6595105	0.84[AMR][1000 genomes]
rs6595106	0.89[AMR][1000 genomes]
rs6595107	0.84[AMR][1000 genomes]
rs6860479	0.89[AMR][1000 genomes]
rs6860878	0.92[AMR][1000 genomes]
rs6863718	0.89[AMR][1000 genomes]
rs6865078	0.89[AMR][1000 genomes]
rs6877140	0.92[AMR][1000 genomes]
rs6877628	0.92[AMR][1000 genomes]
rs6880921	0.89[AMR][1000 genomes]
rs6881936	0.89[AMR][1000 genomes]
rs6882610	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895310	0.89[AMR][1000 genomes]
rs72786862	0.84[AMR][1000 genomes]
rs73241696	0.89[AMR][1000 genomes]
rs73243413	0.89[AMR][1000 genomes]
rs7446931	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7708411	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7718566	0.86[AMR][1000 genomes]
rs9327069	0.81[CEU][hapmap];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2422395	chr5:117442806-117887910	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv882762	chr5:117499480-117706786	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv432802	chr5:117612408-117921244	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117609600-117615200	Weak transcription	Pancreas	Pancrea

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