Variant report

Variant	rs7708411
Chromosome Location	chr5:117650521-117650522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10042731	0.82[AMR][1000 genomes]
rs10044897	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10056187	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10057536	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10075928	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10078455	0.95[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10519541	0.88[ASW][hapmap];0.82[AMR][1000 genomes]
rs1074705	0.83[AMR][1000 genomes]
rs11741705	0.85[AMR][1000 genomes]
rs11744141	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11748351	0.85[AMR][1000 genomes]
rs1382729	0.85[AMR][1000 genomes]
rs1382731	0.85[AMR][1000 genomes]
rs1382732	0.85[AMR][1000 genomes]
rs1382733	0.85[AMR][1000 genomes]
rs1382734	0.85[AMR][1000 genomes]
rs1382735	0.85[AMR][1000 genomes]
rs1382736	0.85[AMR][1000 genomes]
rs1382737	0.82[AMR][1000 genomes]
rs1382738	0.85[AMR][1000 genomes]
rs1871366	0.85[AMR][1000 genomes]
rs2416509	0.80[AMR][1000 genomes]
rs28471035	0.85[AMR][1000 genomes]
rs28473044	0.82[AMR][1000 genomes]
rs28485532	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34434678	0.85[AMR][1000 genomes]
rs41456648	0.80[CEU][hapmap];0.85[MEX][hapmap];0.83[AMR][1000 genomes]
rs4412141	0.82[AMR][1000 genomes]
rs4555864	0.85[AMR][1000 genomes]
rs4555865	0.82[AMR][1000 genomes]
rs4635967	0.82[AMR][1000 genomes]
rs5000371	0.85[AMR][1000 genomes]
rs60815054	0.82[AMR][1000 genomes]
rs60923242	0.83[AMR][1000 genomes]
rs61184343	0.82[AMR][1000 genomes]
rs6595103	0.83[AMR][1000 genomes]
rs6595104	0.85[AMR][1000 genomes]
rs6595106	0.85[AMR][1000 genomes]
rs6860479	0.85[AMR][1000 genomes]
rs6860878	0.82[AMR][1000 genomes]
rs6863718	0.85[AMR][1000 genomes]
rs6865078	0.85[AMR][1000 genomes]
rs6877140	0.82[AMR][1000 genomes]
rs6877628	0.82[AMR][1000 genomes]
rs6880921	0.85[AMR][1000 genomes]
rs6881936	0.85[AMR][1000 genomes]
rs6882610	0.93[ASN][1000 genomes]
rs6895310	0.85[AMR][1000 genomes]
rs73241696	0.85[AMR][1000 genomes]
rs73243413	0.85[AMR][1000 genomes]
rs7446931	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9327069	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027428	chr5:117072745-118036353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv537877	chr5:117072745-118036353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1067621	chr5:117102544-118036352	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv531292	chr5:117102544-118036352	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	esv2422395	chr5:117442806-117887910	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv882762	chr5:117499480-117706786	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv432802	chr5:117612408-117921244	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv599527	chr5:117643335-117772695	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv599528	chr5:117643335-117780062	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1024950	chr5:117648574-117718549	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117650400-117650800	Enhancers	Fetal Lung	lung
2	chr5:117650400-117650800	Enhancers	Ovary	ovary

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