The 2.0 version of rSNPBase

Variant report

Variant rs10079544
Chromosome Location chr5:58471810-58471811
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58439000-58484000 Weak transcription Fetal Kidney kidney
2 chr5:58447600-58473200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr5:58447600-58473400 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr5:58447600-58479600 Weak transcription Left Ventricle heart
5 chr5:58449400-58473600 Weak transcription Primary hematopoietic stem cells short term culture blood
6 chr5:58449800-58489400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr5:58454400-58472800 Weak transcription Stomach Smooth Muscle stomach
8 chr5:58455200-58473400 Weak transcription Fetal Muscle Leg muscle
9 chr5:58455800-58473600 Weak transcription Primary neutrophils fromperipheralblood blood
10 chr5:58457800-58473400 Weak transcription Fetal Intestine Small intestine
11 chr5:58459400-58473400 Weak transcription Fetal Stomach stomach
12 chr5:58460000-58472600 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr5:58461000-58484200 Weak transcription HUVEC blood vessel
14 chr5:58464200-58484000 Weak transcription Brain Anterior Caudate brain
15 chr5:58464200-58485400 Weak transcription Aorta Aorta
16 chr5:58464400-58473000 Weak transcription Right Ventricle heart
17 chr5:58464600-58474400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr5:58464800-58478800 Weak transcription Hela-S3 cervix
19 chr5:58466000-58472800 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr5:58466000-58473600 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr5:58466200-58473600 Weak transcription Placenta Amnion Placenta Amnion
22 chr5:58466200-58474400 Weak transcription Colon Smooth Muscle Colon
23 chr5:58466200-58479400 Weak transcription Psoas Muscle Psoas
24 chr5:58467200-58474800 Weak transcription Esophagus oesophagus
25 chr5:58469000-58483800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
26 chr5:58469200-58484400 Weak transcription Fetal Muscle Trunk muscle
27 chr5:58469800-58473600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr5:58469800-58477000 Genic enhancers A549 lung
29 chr5:58469800-58478400 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr5:58470000-58472800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr5:58470000-58472800 Weak transcription Fetal Intestine Large intestine
32 chr5:58470000-58473800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr5:58470000-58483400 Weak transcription Fetal Lung lung
34 chr5:58470200-58473200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr5:58470200-58481400 Weak transcription Pancreatic Islets Pancreatic Islet
36 chr5:58470600-58480600 Weak transcription Fetal Heart heart
37 chr5:58470600-58482000 Weak transcription Rectal Smooth Muscle rectum
38 chr5:58470600-58483800 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr5:58470800-58472800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr5:58471000-58479000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr5:58471000-58483600 Weak transcription Brain Angular Gyrus brain
42 chr5:58471000-58483800 Weak transcription Brain Inferior Temporal Lobe brain
43 chr5:58471000-58484800 Weak transcription Pancreas Pancrea
44 chr5:58471400-58473600 Weak transcription Fetal Brain Female brain
45 chr5:58471600-58484200 Weak transcription Brain Germinal Matrix brain

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Last update: Aug 31, 2015