Variant report

Variant	rs10036199
Chromosome Location	chr5:58424255-58424256
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58416156..58418689-chr5:58423401..58425784,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10035950	1.00[ASN][1000 genomes]
rs10056754	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058671	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10058676	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10062176	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069146	0.86[EUR][1000 genomes]
rs10079544	1.00[ASN][1000 genomes]
rs17722929	0.88[EUR][1000 genomes]
rs28539646	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28544243	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35425879	0.85[EUR][1000 genomes]
rs72764076	0.82[EUR][1000 genomes]
rs7734053	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734070	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292192	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58418600-58424800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:58422800-58424400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
3	chr5:58423200-58426400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:58423600-58424400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:58423600-58424400	Enhancers	Liver	Liver
6	chr5:58423600-58424800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:58423600-58425200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:58423800-58424400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:58423800-58424400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr5:58423800-58424400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr5:58423800-58424400	Flanking Active TSS	Fetal Heart	heart
12	chr5:58423800-58424600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:58423800-58425000	Flanking Active TSS	A549	lung
14	chr5:58423800-58429400	Weak transcription	Aorta	Aorta
15	chr5:58424000-58424400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr5:58424000-58424400	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr5:58424000-58424400	Enhancers	Brain Angular Gyrus	brain
18	chr5:58424000-58424400	Enhancers	Brain Germinal Matrix	brain
19	chr5:58424000-58424400	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:58424000-58424400	Enhancers	Fetal Intestine Small	intestine
21	chr5:58424000-58424400	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr5:58424000-58424400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr5:58424000-58424600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr5:58424000-58424600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:58424000-58424600	Enhancers	Brain Hippocampus Middle	brain
26	chr5:58424000-58424600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:58424000-58424600	Enhancers	Fetal Kidney	kidney
28	chr5:58424000-58424600	Enhancers	Fetal Lung	lung
29	chr5:58424000-58424600	Enhancers	Stomach Mucosa	stomach
30	chr5:58424000-58424800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr5:58424000-58424800	Enhancers	Fetal Thymus	thymus
32	chr5:58424000-58424800	Enhancers	NHDF-Ad	bronchial
33	chr5:58424000-58425200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr5:58424000-58425200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr5:58424000-58425400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr5:58424000-58425400	Enhancers	Fetal Muscle Leg	muscle
37	chr5:58424000-58425600	Enhancers	Colon Smooth Muscle	Colon
38	chr5:58424000-58425800	Enhancers	Placenta Amnion	Placenta Amnion
39	chr5:58424000-58426400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr5:58424000-58426400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:58424000-58427200	Enhancers	Hela-S3	cervix
42	chr5:58424000-58439800	Weak transcription	Small Intestine	intestine
43	chr5:58424000-58447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:58424200-58424400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr5:58424200-58424400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr5:58424200-58424400	Enhancers	Primary hematopoietic stem cells	blood
47	chr5:58424200-58424400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:58424200-58424400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:58424200-58424400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr5:58424200-58424400	Enhancers	Stomach Smooth Muscle	stomach

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