Variant report

Variant	rs10080836
Chromosome Location	chr6:150894838-150894839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150893419..150895896-chr6:150900090..150902998,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1873729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432619	0.83[EUR][1000 genomes]
rs73002240	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9480481	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150890000-150895800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:150892000-150897200	Enhancers	Fetal Thymus	thymus
3	chr6:150893400-150898000	Enhancers	Spleen	Spleen
4	chr6:150894000-150896000	Enhancers	Thymus	Thymus
5	chr6:150894200-150895000	Enhancers	Lung	lung
6	chr6:150894200-150895000	Enhancers	Right Atrium	heart
7	chr6:150894200-150895600	Enhancers	Primary T cells from cord blood	blood
8	chr6:150894200-150896000	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:150894200-150896000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:150894400-150895000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:150894400-150896400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:150894600-150895000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:150894600-150895800	Weak transcription	Left Ventricle	heart
14	chr6:150894600-150895800	Weak transcription	Right Ventricle	heart
15	chr6:150894600-150896400	Enhancers	Primary B cells from cord blood	blood
16	chr6:150894600-150899000	Weak transcription	Fetal Kidney	kidney
17	chr6:150894600-150903200	Weak transcription	Fetal Heart	heart
18	chr6:150894800-150895600	Enhancers	Liver	Liver
19	chr6:150894800-150895800	Weak transcription	Placenta	Placenta
20	chr6:150894800-150896600	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:150894800-150897000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:150894800-150897800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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