Variant report

Variant	rs73002240
Chromosome Location	chr6:150898422-150898423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10080836	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1873729	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9480481	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150894600-150899000	Weak transcription	Fetal Kidney	kidney
2	chr6:150894600-150903200	Weak transcription	Fetal Heart	heart
3	chr6:150895000-150900800	Weak transcription	Right Atrium	heart
4	chr6:150895800-150905800	Weak transcription	Adipose Nuclei	Adipose
5	chr6:150896000-150898800	Weak transcription	Thymus	Thymus
6	chr6:150896000-150905800	Weak transcription	Left Ventricle	heart
7	chr6:150897200-150898600	Weak transcription	Lung	lung
8	chr6:150898400-150898600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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