Variant report

Variant	rs10082222
Chromosome Location	chr1:160966622-160966623
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:160965718..160968387-chr1:160991950..160993671,3	MCF-7	breast:
2	chr1:160965107..160967123-chr1:161018782..161021042,2	MCF-7	breast:
3	chr1:160965945..160967708-chr1:160990265..160992249,2	K562	blood:
4	chr1:160965921..160968886-chr1:161007500..161010236,2	K562	blood:
5	chr1:160965718..160969126-chr1:160976993..160979194,4	K562	blood:
6	chr1:160959131..160961760-chr1:160965672..160967249,2	K562	blood:
7	chr1:160964619..160967227-chr1:161147832..161149924,2	K562	blood:
8	chr1:160965718..160967539-chr1:160977694..160979398,2	K562	blood:
9	chr1:160964221..160966821-chr1:161014476..161016615,2	MCF-7	breast:
10	chr1:160964763..160967593-chr1:161005630..161008574,2	MCF-7	breast:
11	chr1:160965046..160966905-chr1:161009297..161010880,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158769	Chromatin interaction
ENSG00000215845	Chromatin interaction
ENSG00000158773	Chromatin interaction
ENSG00000270149	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13374126	1.00[AFR][1000 genomes]
rs13374133	1.00[AFR][1000 genomes]
rs6694185	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv548058	chr1:160925455-160989614	Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160948600-160968000	Weak transcription	Ovary	ovary
2	chr1:160952200-160967000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:160953800-160968200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:160957200-160966800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:160957400-160967000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:160957800-160968000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:160960000-160967200	Weak transcription	Primary B cells from cord blood	blood
8	chr1:160960000-160967400	Weak transcription	Lung	lung
9	chr1:160960000-160968000	Weak transcription	Pancreas	Pancrea
10	chr1:160960000-160970200	Weak transcription	Right Ventricle	heart
11	chr1:160960200-160966800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr1:160960200-160967000	Weak transcription	Placenta	Placenta
13	chr1:160960200-160967600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr1:160960200-160967600	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:160960200-160968000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:160960200-160968400	Weak transcription	Left Ventricle	heart
17	chr1:160960400-160966800	Weak transcription	Adipose Nuclei	Adipose
18	chr1:160960400-160967000	Weak transcription	Fetal Intestine Small	intestine
19	chr1:160960400-160967600	Weak transcription	Fetal Stomach	stomach
20	chr1:160960400-160968000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:160960400-160968200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:160960400-160968200	Weak transcription	Fetal Brain Female	brain
23	chr1:160960400-160978400	Weak transcription	Fetal Lung	lung
24	chr1:160960600-160966800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr1:160960600-160967000	Weak transcription	Fetal Thymus	thymus
26	chr1:160960600-160967000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr1:160960600-160967000	Weak transcription	Stomach Mucosa	stomach
28	chr1:160960600-160967000	Weak transcription	GM12878-XiMat	blood
29	chr1:160960600-160967000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr1:160960600-160967200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr1:160960600-160967200	Weak transcription	HepG2	liver
32	chr1:160960600-160967400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:160960600-160967600	Weak transcription	Primary T cells from cord blood	blood
34	chr1:160960600-160968000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:160960600-160968000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr1:160960600-160968000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr1:160960600-160968000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:160960600-160968000	Weak transcription	Thymus	Thymus
39	chr1:160960600-160968400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr1:160960600-160968600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr1:160960600-160968800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr1:160960600-160968800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr1:160960600-160968800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:160960600-160968800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:160960600-160969000	Weak transcription	Dnd41	blood
46	chr1:160960600-160969600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr1:160960600-160977400	Weak transcription	Fetal Kidney	kidney
48	chr1:160960600-160981600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr1:160960800-160967000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr1:160961000-160966800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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