Variant report

Variant	rs13374126
Chromosome Location	chr1:160979975-160979976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:160976230..160985885-chr1:160986202..160992598,31	K562	blood:
2	chr1:160979371..160981331-chr1:160988203..160991195,2	K562	blood:
3	chr1:160979139..160980938-chr1:160981553..160984466,3	MCF-7	breast:
4	chr1:160978849..160980925-chr1:161129795..161132050,2	K562	blood:
5	chr1:160977491..160981200-chr1:161001493..161003546,3	K562	blood:
6	chr1:160970146..160973066-chr1:160977538..160980192,2	K562	blood:
7	chr1:160962192..160965720-chr1:160976093..160980486,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158769	Chromatin interaction
ENSG00000143258	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10082222	1.00[AFR][1000 genomes]
rs13374133	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv548058	chr1:160925455-160989614	Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160960600-160981600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr1:160963400-160983000	Weak transcription	HSMMtube	muscle
3	chr1:160970000-160982800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:160970600-160981800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:160970600-160981800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr1:160970600-160982400	Weak transcription	Dnd41	blood
7	chr1:160970600-160982600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:160970600-160983000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:160970600-160983000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:160970600-160983000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:160970800-160981600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr1:160970800-160982600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:160970800-160983000	Weak transcription	HSMM	muscle
14	chr1:160971000-160981400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:160971000-160981400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr1:160971000-160981600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr1:160971000-160982000	Weak transcription	GM12878-XiMat	blood
18	chr1:160971000-160982600	Weak transcription	Thymus	Thymus
19	chr1:160971000-160983200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr1:160971200-160981200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr1:160971200-160981800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:160971200-160981800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr1:160971200-160981800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:160971200-160981800	Weak transcription	Fetal Thymus	thymus
25	chr1:160971200-160982800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:160971200-160983000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:160971200-160983000	Weak transcription	Colonic Mucosa	Colon
28	chr1:160971400-160981200	Weak transcription	Primary B cells from cord blood	blood
29	chr1:160971400-160981400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr1:160971400-160981800	Weak transcription	Small Intestine	intestine
31	chr1:160971400-160983000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:160971600-160981000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr1:160971600-160981600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr1:160971600-160982600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr1:160971600-160983000	Weak transcription	Left Ventricle	heart
36	chr1:160971800-160981200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:160971800-160981400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:160971800-160982800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr1:160971800-160982800	Weak transcription	HMEC	breast
40	chr1:160971800-160983000	Weak transcription	Fetal Stomach	stomach
41	chr1:160972200-160981000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr1:160972400-160981600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr1:160972600-160983000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr1:160972600-160983000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:160972600-160983000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr1:160976200-160982200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:160976200-160983000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr1:160976200-160983000	Weak transcription	Right Ventricle	heart
49	chr1:160976600-160983000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr1:160976600-160983000	Weak transcription	Spleen	Spleen

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