Variant report

Variant	rs10082872
Chromosome Location	chr12:11788661-11788662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12303794	0.93[EUR][1000 genomes]
rs17210029	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.90[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2193031	0.85[EUR][1000 genomes]
rs2216158	0.85[EUR][1000 genomes]
rs4763260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6488433	0.81[EUR][1000 genomes]
rs6488439	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898803	chr12:11757867-11794636	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11787000-11788800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:11787000-11789000	Enhancers	NHEK	skin
3	chr12:11787000-11789200	Enhancers	HMEC	breast
4	chr12:11787600-11791000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:11787600-11791200	Weak transcription	Osteobl	bone
6	chr12:11788000-11789000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:11788200-11788800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:11788200-11789200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr12:11788200-11790000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr12:11788200-11790000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:11788600-11789200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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