Variant report

Variant	rs6488433
Chromosome Location	chr12:11768462-11768463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10082872	1.00[CEU][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs12303794	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17210029	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs2193029	0.90[ASN][1000 genomes]
rs2193031	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2216158	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4763257	0.84[ASN][1000 genomes]
rs4763258	0.90[ASN][1000 genomes]
rs4763260	0.81[EUR][1000 genomes]
rs6488438	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6488439	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7133052	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898803	chr12:11757867-11794636	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470267	chr12:11767406-11787989	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11760800-11775600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:11763000-11771400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:11763000-11773400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:11764000-11768600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:11764000-11770000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr12:11766000-11770600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:11766000-11774800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr12:11766200-11771400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:11767400-11768800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:11767600-11773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:11768200-11768600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:11768200-11768600	Enhancers	Brain Anterior Caudate	brain
13	chr12:11768200-11768800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr12:11768200-11768800	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr12:11768200-11768800	Enhancers	Brain Substantia Nigra	brain
16	chr12:11768400-11768600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:11768400-11768800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr12:11768400-11768800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:11768400-11768800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:11768400-11769000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr12:11768400-11769000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr12:11768400-11769000	Enhancers	Liver	Liver

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