Variant report

Variant	rs10083397
Chromosome Location	chr14:68790271-68790272
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10047807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134671	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134891	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151295	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28629275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7152405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013472	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014510	1.00[AMR][1000 genomes]
rs8022468	1.00[AMR][1000 genomes]
rs9806028	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68777000-68792200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr14:68777000-68793400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:68783400-68793600	Weak transcription	Pancreas	Pancrea
5	chr14:68785600-68793600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:68785600-68812400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr14:68786600-68795200	Weak transcription	Aorta	Aorta
8	chr14:68786600-68799000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:68786800-68798800	Weak transcription	Brain Anterior Caudate	brain
10	chr14:68787000-68792400	Weak transcription	Colon Smooth Muscle	Colon
11	chr14:68787400-68798400	Weak transcription	Fetal Stomach	stomach
12	chr14:68787600-68795200	Weak transcription	Spleen	Spleen
13	chr14:68787800-68791800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:68788000-68791400	Weak transcription	Primary B cells from cord blood	blood
15	chr14:68788200-68791400	Weak transcription	GM12878-XiMat	blood
16	chr14:68788200-68793600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr14:68788200-68807000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:68788400-68790400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:68788400-68796600	Weak transcription	Fetal Lung	lung
20	chr14:68789200-68790600	Enhancers	Ovary	ovary
21	chr14:68789600-68790600	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:68789600-68810400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:68789800-68791000	Weak transcription	Gastric	stomach
24	chr14:68790000-68790600	Enhancers	HepG2	liver
25	chr14:68790200-68795600	Weak transcription	Psoas Muscle	Psoas

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