Variant report

Variant	rs7152405
Chromosome Location	chr14:68781083-68781084
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68771546..68782546-chr14:69251132..69265678,35	MCF-7	breast:
2	chr14:68778894..68781152-chr14:68792473..68795280,2	MCF-7	breast:
3	chr14:68780053..68783050-chr14:68784750..68787033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10047807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10083397	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10151295	1.00[AMR][1000 genomes]
rs13379204	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28629275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8013472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014510	1.00[AMR][1000 genomes]
rs8022468	1.00[AMR][1000 genomes]
rs9806028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68769000-68810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:68772000-68788400	Enhancers	Primary B cells from peripheral blood	blood
3	chr14:68772600-68788000	Weak transcription	Lung	lung
4	chr14:68774400-68785200	Weak transcription	Psoas Muscle	Psoas
5	chr14:68776200-68781800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:68776200-68789400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:68776400-68785400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:68777000-68781800	Weak transcription	Small Intestine	intestine
9	chr14:68777000-68785800	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:68777000-68792200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:68777000-68793400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr14:68777800-68781200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:68777800-68785400	Weak transcription	Fetal Kidney	kidney
14	chr14:68778800-68781400	Enhancers	Brain Hippocampus Middle	brain
15	chr14:68778800-68782000	Enhancers	Primary B cells from cord blood	blood
16	chr14:68779000-68781400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr14:68779000-68781400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:68779000-68781600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:68779000-68787400	Weak transcription	Primary T cells from cord blood	blood
20	chr14:68779200-68782200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr14:68779400-68781800	Weak transcription	HepG2	liver
22	chr14:68779600-68781200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:68779600-68781400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:68779600-68782200	Enhancers	Fetal Muscle Leg	muscle
25	chr14:68779600-68782800	Weak transcription	Liver	Liver
26	chr14:68779800-68781200	Enhancers	Brain Anterior Caudate	brain
27	chr14:68779800-68781600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr14:68780000-68781200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:68780000-68781200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:68780000-68781200	Enhancers	Spleen	Spleen
31	chr14:68780000-68781400	Enhancers	Fetal Brain Male	brain
32	chr14:68780200-68781200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr14:68780200-68781200	Enhancers	Fetal Thymus	thymus
34	chr14:68780200-68781200	Enhancers	Ovary	ovary
35	chr14:68780200-68784800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr14:68780400-68781400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr14:68780400-68781400	Enhancers	GM12878-XiMat	blood
38	chr14:68780400-68781800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:68780400-68785200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:68780400-68785200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr14:68780400-68785400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr14:68780600-68781200	Enhancers	K562	blood
43	chr14:68780600-68782200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:68780600-68784800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr14:68780600-68785200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:68780800-68781200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:68780800-68782200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr14:68780800-68783000	Weak transcription	Pancreas	Pancrea
49	chr14:68780800-68787600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:68781000-68781200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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