Variant report

Variant	rs10086193
Chromosome Location	chr8:103826254-103826255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103541696..103544133-chr8:103825198..103827958,2	MCF-7	breast:
2	chr8:102462115..102464304-chr8:103824112..103827007,2	K562	blood:
3	chr8:103657627..103672045-chr8:103815832..103826635,94	K562	blood:
4	chr8:103663684..103664744-chr8:103826225..103827430,7	K562	blood:
5	chr8:103659827..103671648-chr8:103816894..103829599,93	K562	blood:
6	chr8:103644446..103678119-chr8:103815618..103829807,419	MCF-7	breast:
7	chr8:103023024..103025926-chr8:103825006..103827127,2	K562	blood:
8	chr8:103653489..103674518-chr8:103809987..103832119,275	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10104174	0.89[AMR][1000 genomes]
rs10109351	0.89[AMR][1000 genomes]
rs11992533	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13439806	0.90[YRI][hapmap]
rs28391319	0.89[AMR][1000 genomes]
rs28485929	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60663456	0.89[AMR][1000 genomes]
rs6994115	0.90[YRI][hapmap]
rs73280743	0.89[AMR][1000 genomes]
rs73701529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817818	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv465751	chr8:103817106-103894326	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv611822	chr8:103817106-103894326	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103821600-103826400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:103822800-103826400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:103822800-103837400	Weak transcription	Gastric	stomach
4	chr8:103823000-103826400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:103823000-103826400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:103823000-103826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:103823000-103826600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr8:103823000-103826600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:103823000-103826800	Weak transcription	Left Ventricle	heart
10	chr8:103823000-103831600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr8:103823000-103835600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:103823000-103835600	Weak transcription	Adipose Nuclei	Adipose
13	chr8:103823000-103837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:103823000-103839600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:103823000-103841400	Weak transcription	Pancreas	Pancrea
16	chr8:103823000-103855000	Weak transcription	Esophagus	oesophagus
17	chr8:103823200-103841800	Weak transcription	Aorta	Aorta
18	chr8:103823200-103844000	Weak transcription	Right Ventricle	heart
19	chr8:103823200-103853400	Weak transcription	Right Atrium	heart
20	chr8:103823400-103870600	Weak transcription	Stomach Mucosa	stomach
21	chr8:103823600-103826400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:103823600-103826800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr8:103823600-103826800	Weak transcription	Brain Anterior Caudate	brain
24	chr8:103823600-103826800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:103823600-103826800	Weak transcription	Fetal Kidney	kidney
26	chr8:103823600-103826800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:103823600-103827000	Enhancers	Hela-S3	cervix
28	chr8:103823600-103827200	Enhancers	Fetal Thymus	thymus
29	chr8:103823600-103827800	Enhancers	Duodenum Mucosa	Duodenum
30	chr8:103823600-103834800	Weak transcription	Fetal Brain Female	brain
31	chr8:103823600-103837400	Weak transcription	Brain Hippocampus Middle	brain
32	chr8:103823600-103838800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:103823600-103839800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:103823600-103840000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr8:103823800-103826400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr8:103823800-103826400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr8:103823800-103826400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:103823800-103826400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:103823800-103826400	Weak transcription	Fetal Muscle Leg	muscle
40	chr8:103823800-103826600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:103823800-103826600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr8:103823800-103826600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr8:103823800-103826600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr8:103823800-103826600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:103823800-103826600	Weak transcription	Colon Smooth Muscle	Colon
46	chr8:103823800-103826600	Weak transcription	Fetal Brain Male	brain
47	chr8:103823800-103826600	Weak transcription	Fetal Stomach	stomach
48	chr8:103823800-103826800	Weak transcription	Primary B cells from cord blood	blood
49	chr8:103823800-103826800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr8:103823800-103826800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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