Variant report

Variant	rs13439806
Chromosome Location	chr8:103867693-103867694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KB-1507C5.2.1-1	chr8:103867606-103868303	ENSG00000253385

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10086193	0.90[YRI][hapmap]
rs10097041	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11992533	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs28485929	0.86[AFR][1000 genomes]
rs28653358	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28711114	0.84[AFR][1000 genomes]
rs60308236	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6994115	1.00[ASW][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73280794	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73282506	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7830587	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv465751	chr8:103817106-103894326	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv611822	chr8:103817106-103894326	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv891245	chr8:103838004-103907253	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103823400-103870600	Weak transcription	Stomach Mucosa	stomach
2	chr8:103826800-103871200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:103833400-103870800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:103834600-103867800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr8:103834600-103871200	Strong transcription	K562	blood
6	chr8:103835000-103868000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:103835000-103871000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:103835200-103870200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:103835200-103874200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:103835600-103867800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr8:103835800-103871000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:103836000-103867800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:103836000-103871000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:103836200-103868000	Strong transcription	HMEC	breast
15	chr8:103836200-103873000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:103836600-103870600	Strong transcription	H1 Cell Line	embryonic stem cell
17	chr8:103837600-103870400	Strong transcription	Dnd41	blood
18	chr8:103839200-103870800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:103841000-103870200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr8:103843200-103868200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:103843400-103868000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:103845600-103868600	Strong transcription	GM12878-XiMat	blood
23	chr8:103848800-103869000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:103848800-103870600	Weak transcription	Fetal Heart	heart
25	chr8:103852000-103868800	Weak transcription	Psoas Muscle	Psoas
26	chr8:103853800-103868000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr8:103855200-103870200	Weak transcription	Gastric	stomach
28	chr8:103855400-103870800	Strong transcription	HSMM	muscle
29	chr8:103856000-103871600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:103856000-103872800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:103856000-103874200	Weak transcription	Brain Substantia Nigra	brain
32	chr8:103856200-103873800	Weak transcription	Fetal Brain Male	brain
33	chr8:103857600-103870800	Strong transcription	NH-A	brain
34	chr8:103857800-103868000	Strong transcription	Primary B cells from cord blood	blood
35	chr8:103857800-103871800	Weak transcription	Small Intestine	intestine
36	chr8:103858000-103870200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:103858200-103870400	Strong transcription	Fetal Thymus	thymus
38	chr8:103858200-103870600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:103858200-103871400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr8:103858600-103868000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:103858600-103870600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr8:103859000-103867800	Strong transcription	A549	lung
43	chr8:103859000-103868000	Strong transcription	Osteobl	bone
44	chr8:103859200-103870200	Strong transcription	Hela-S3	cervix
45	chr8:103859200-103870400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:103859200-103870400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:103859200-103871200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr8:103859400-103870200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr8:103859400-103870400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr8:103859800-103868400	Strong transcription	Duodenum Smooth Muscle	Duodenum

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