Variant report

Variant	rs73280794
Chromosome Location	chr8:103907702-103907703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103874946..103878144-chr8:103904857..103910279,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLF10-1	chr8:103905962-103908782	NONHSAT128128

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000253320	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10097041	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216659	0.86[AFR][1000 genomes]
rs13439806	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28653358	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28711114	0.94[AFR][1000 genomes]
rs60308236	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6994115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282506	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103878000-103908800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:103879200-103922000	Weak transcription	Fetal Intestine Small	intestine
3	chr8:103894200-103914600	Weak transcription	Fetal Lung	lung
4	chr8:103896400-103911200	Weak transcription	Primary T cells from cord blood	blood
5	chr8:103899600-103910200	Weak transcription	Thymus	Thymus
6	chr8:103900800-103908600	Weak transcription	Primary B cells from cord blood	blood
7	chr8:103905200-103910800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:103905400-103910800	Enhancers	Placenta	Placenta
9	chr8:103906000-103907800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr8:103906000-103907800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr8:103906000-103908000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:103906200-103907800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:103906200-103909400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:103906400-103907800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:103906400-103907800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:103906400-103907800	Enhancers	Brain Hippocampus Middle	brain
17	chr8:103906400-103907800	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:103906400-103907800	Enhancers	Brain Substantia Nigra	brain
19	chr8:103906400-103909200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:103906600-103907800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:103906600-103907800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:103906600-103907800	Enhancers	Right Atrium	heart
23	chr8:103906600-103907800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr8:103906600-103907800	Enhancers	Stomach Mucosa	stomach
25	chr8:103906600-103910200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:103906800-103907800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:103906800-103907800	Enhancers	Fetal Brain Female	brain
28	chr8:103906800-103907800	Enhancers	Gastric	stomach
29	chr8:103906800-103907800	Enhancers	Lung	lung
30	chr8:103906800-103908000	Enhancers	Spleen	Spleen
31	chr8:103907000-103910600	Weak transcription	HSMM	muscle
32	chr8:103907000-103911600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr8:103907200-103909000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:103907200-103910400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr8:103907200-103910400	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr8:103907200-103912800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr8:103907400-103907800	Enhancers	Brain Cingulate Gyrus	brain
38	chr8:103907400-103908000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:103907400-103908600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:103907400-103908800	Weak transcription	Adipose Nuclei	Adipose
41	chr8:103907400-103908800	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:103907400-103909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr8:103907400-103909000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr8:103907400-103909000	Weak transcription	Psoas Muscle	Psoas
45	chr8:103907400-103909200	Weak transcription	Left Ventricle	heart
46	chr8:103907400-103909200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr8:103907400-103909600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:103907400-103909800	Weak transcription	Pancreas	Pancrea
49	chr8:103907400-103910000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr8:103907400-103910000	Weak transcription	Liver	Liver

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