Variant report

Variant	rs10216659
Chromosome Location	chr8:103922196-103922197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103874964..103877161-chr8:103921319..103923722,3	MCF-7	breast:
2	chr8:103922092..103927536-chr8:103936066..103939373,4	MCF-7	breast:
3	chr8:103873731..103878652-chr8:103915000..103924941,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000244052	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10097041	0.85[AFR][1000 genomes]
rs28653358	0.83[AFR][1000 genomes]
rs28711114	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60308236	0.85[AFR][1000 genomes]
rs6994115	0.86[AFR][1000 genomes]
rs7016840	1.00[CHB][hapmap]
rs73280794	0.86[AFR][1000 genomes]
rs73282506	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103907600-103922600	Weak transcription	Brain Germinal Matrix	brain
2	chr8:103907800-103922600	Weak transcription	Gastric	stomach
3	chr8:103911400-103922200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:103911400-103922200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:103911800-103922600	Weak transcription	Left Ventricle	heart
6	chr8:103911800-103922600	Weak transcription	Lung	lung
7	chr8:103912400-103922600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:103913400-103929800	Weak transcription	Psoas Muscle	Psoas
9	chr8:103913600-103922600	Weak transcription	Spleen	Spleen
10	chr8:103915800-103922400	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:103915800-103922600	Weak transcription	Right Atrium	heart
12	chr8:103916000-103922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr8:103916400-103922200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:103917400-103922200	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:103917400-103922600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:103917400-103925800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:103917600-103922200	Weak transcription	Fetal Stomach	stomach
18	chr8:103918800-103922600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:103918800-103922600	Weak transcription	Pancreas	Pancrea
20	chr8:103919000-103922400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr8:103919000-103922600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:103919200-103922400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:103919400-103922400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr8:103919800-103922600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:103920000-103922400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:103920600-103922600	Weak transcription	Small Intestine	intestine
27	chr8:103920600-103923600	Enhancers	HMEC	breast
28	chr8:103920600-103923800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr8:103920800-103922400	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr8:103921000-103923600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:103921200-103922200	Enhancers	HUVEC	blood vessel
32	chr8:103921200-103922600	Enhancers	HSMM	muscle
33	chr8:103921200-103923000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:103921200-103923000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:103921200-103923000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr8:103921200-103923000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:103921200-103923000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:103921200-103923200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:103921200-103923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:103921200-103923600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:103921200-103923600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:103921200-103923600	Enhancers	NHLF	lung
43	chr8:103921200-103923800	Enhancers	NHEK	skin
44	chr8:103921400-103922400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr8:103921400-103922800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr8:103921400-103922800	Enhancers	Fetal Brain Male	brain
47	chr8:103921400-103923000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr8:103921400-103923000	Enhancers	Placenta	Placenta
49	chr8:103921400-103923200	Enhancers	H1 Cell Line	embryonic stem cell
50	chr8:103921400-103923200	Enhancers	Rectal Smooth Muscle	rectum

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