Variant report

Variant	rs7830587
Chromosome Location	chr8:103868092-103868093
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103847188..103849058-chr8:103867728..103870854,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KB-1507C5.2.1-1	chr8:103867606-103868303	ENSG00000253385

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10104174	0.98[AFR][1000 genomes]
rs10109351	0.86[AFR][1000 genomes]
rs13439806	0.89[AMR][1000 genomes]
rs28391319	0.95[AFR][1000 genomes]
rs28625448	0.90[AMR][1000 genomes]
rs28653358	0.89[AMR][1000 genomes]
rs60308236	0.89[AMR][1000 genomes]
rs73280743	0.95[AFR][1000 genomes]
rs7817818	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv465751	chr8:103817106-103894326	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv611822	chr8:103817106-103894326	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv891245	chr8:103838004-103907253	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103823400-103870600	Weak transcription	Stomach Mucosa	stomach
2	chr8:103826800-103871200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:103833400-103870800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:103834600-103871200	Strong transcription	K562	blood
5	chr8:103835000-103871000	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:103835200-103870200	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:103835200-103874200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:103835800-103871000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:103836000-103871000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:103836200-103873000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:103836600-103870600	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr8:103837600-103870400	Strong transcription	Dnd41	blood
13	chr8:103839200-103870800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:103841000-103870200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:103843200-103868200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:103845600-103868600	Strong transcription	GM12878-XiMat	blood
17	chr8:103848800-103869000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:103848800-103870600	Weak transcription	Fetal Heart	heart
19	chr8:103852000-103868800	Weak transcription	Psoas Muscle	Psoas
20	chr8:103855200-103870200	Weak transcription	Gastric	stomach
21	chr8:103855400-103870800	Strong transcription	HSMM	muscle
22	chr8:103856000-103871600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:103856000-103872800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:103856000-103874200	Weak transcription	Brain Substantia Nigra	brain
25	chr8:103856200-103873800	Weak transcription	Fetal Brain Male	brain
26	chr8:103857600-103870800	Strong transcription	NH-A	brain
27	chr8:103857800-103871800	Weak transcription	Small Intestine	intestine
28	chr8:103858000-103870200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:103858200-103870400	Strong transcription	Fetal Thymus	thymus
30	chr8:103858200-103870600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:103858200-103871400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr8:103858600-103870600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr8:103859200-103870200	Strong transcription	Hela-S3	cervix
34	chr8:103859200-103870400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:103859200-103870400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:103859200-103871200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr8:103859400-103870200	Strong transcription	Duodenum Mucosa	Duodenum
38	chr8:103859400-103870400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr8:103859800-103868400	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:103859800-103868600	Strong transcription	Liver	Liver
41	chr8:103859800-103869400	Strong transcription	Fetal Intestine Large	intestine
42	chr8:103859800-103870400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr8:103859800-103871000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:103860200-103869400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:103860200-103870400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:103860200-103870600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr8:103860400-103869200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr8:103860600-103868600	Weak transcription	Colon Smooth Muscle	Colon
49	chr8:103860800-103870200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr8:103862400-103868800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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