Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10089736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10089873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10090450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096318	1.00[EUR][1000 genomes]
rs10100033	1.00[EUR][1000 genomes]
rs10100034	1.00[EUR][1000 genomes]
rs10101387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10106598	1.00[EUR][1000 genomes]
rs10107272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10108377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10108909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465291	1.00[EUR][1000 genomes]
rs28505522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28529603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28577138	1.00[EUR][1000 genomes]
rs28592137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28648622	1.00[EUR][1000 genomes]
rs28689595	1.00[EUR][1000 genomes]
rs28716492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28719759	1.00[EUR][1000 genomes]
rs28813413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60100425	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34757200-34763400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:34757400-34763400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:34762200-34762800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr8:34762200-34766400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:34762400-34766800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:34762600-34762800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:34762600-34763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:34762600-34763800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:34762600-34763800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:34762600-34764800	Enhancers	HMEC	breast

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