Variant report
| Variant | rs28716492 |
|---|---|
| Chromosome Location | chr8:34744204-34744205 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10086259 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10089736 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10089873 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10090450 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10093106 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10096318 | 1.00[EUR][1000 genomes] |
| rs10100033 | 1.00[EUR][1000 genomes] |
| rs10100034 | 1.00[EUR][1000 genomes] |
| rs10101387 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10106598 | 1.00[EUR][1000 genomes] |
| rs10107272 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10108377 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10108909 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13439350 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28465291 | 1.00[EUR][1000 genomes] |
| rs28505522 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28529603 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28577138 | 1.00[EUR][1000 genomes] |
| rs28592137 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28648622 | 1.00[EUR][1000 genomes] |
| rs28689595 | 1.00[EUR][1000 genomes] |
| rs28719759 | 1.00[EUR][1000 genomes] |
| rs28813413 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60100425 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3693375 | chr8:34631970-34780509 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv972208 | chr8:34644254-34790092 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv890716 | chr8:34707436-34822797 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1017085 | chr8:34742896-35594241 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv539546 | chr8:34742896-35594241 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:34743600-34752600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
