Variant report

Variant	rs1008700
Chromosome Location	chr13:70191323-70191324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12870586	0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12870847	0.94[ASN][1000 genomes]
rs1330092	0.92[ASN][1000 genomes]
rs2026130	0.83[AMR][1000 genomes]
rs2026131	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4362276	0.93[ASN][1000 genomes]
rs4884856	0.94[ASN][1000 genomes]
rs7328740	0.94[ASN][1000 genomes]
rs9541994	0.94[ASN][1000 genomes]
rs9564580	0.98[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9572202	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9572204	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9572205	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9592643	0.95[ASN][1000 genomes]
rs9599499	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70190800-70191600	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links