Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1008700	0.93[ASN][1000 genomes]
rs11839809	0.85[JPT][hapmap]
rs12867754	0.93[JPT][hapmap]
rs12870586	0.99[ASN][1000 genomes]
rs12870847	0.99[ASN][1000 genomes]
rs1330092	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17085275	0.84[JPT][hapmap]
rs4884856	0.99[ASN][1000 genomes]
rs7323633	0.84[JPT][hapmap]
rs7328740	0.98[ASN][1000 genomes]
rs7339316	0.82[JPT][hapmap]
rs9317836	0.85[JPT][hapmap]
rs9529625	0.85[JPT][hapmap]
rs9541994	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9542037	0.85[JPT][hapmap]
rs9542044	0.85[JPT][hapmap]
rs9564580	0.98[ASN][1000 genomes]
rs9564592	0.84[JPT][hapmap]
rs9572204	0.96[ASN][1000 genomes]
rs9572205	0.99[ASN][1000 genomes]
rs9572242	0.85[JPT][hapmap]
rs9592643	0.96[ASN][1000 genomes]
rs9592651	0.85[JPT][hapmap]
rs9599498	0.85[JPT][hapmap]
rs9599499	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70195000-70197600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:70196000-70197600	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search: