Variant report

Variant	rs17085275
Chromosome Location	chr13:70283005-70283006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11839809	0.89[JPT][hapmap]
rs12560587	0.84[ASN][1000 genomes]
rs12858377	0.88[ASN][1000 genomes]
rs12864266	0.87[ASN][1000 genomes]
rs12864567	0.84[ASN][1000 genomes]
rs12864670	0.85[ASN][1000 genomes]
rs12865145	0.85[ASN][1000 genomes]
rs12867754	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2152778	0.83[ASN][1000 genomes]
rs3909551	0.84[CEU][hapmap]
rs58084677	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs71415694	0.81[ASN][1000 genomes]
rs7321156	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7323633	0.89[JPT][hapmap]
rs7339316	0.88[JPT][hapmap]
rs9317832	0.87[ASN][1000 genomes]
rs9317833	0.87[ASN][1000 genomes]
rs9317836	0.89[JPT][hapmap]
rs9317837	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9529625	0.89[JPT][hapmap]
rs9542037	0.89[JPT][hapmap]
rs9542044	0.90[JPT][hapmap]
rs9542068	0.82[CEU][hapmap]
rs9564589	0.84[ASN][1000 genomes]
rs9564590	0.90[ASN][1000 genomes]
rs9564592	0.89[JPT][hapmap]
rs9572234	0.87[ASN][1000 genomes]
rs9572235	0.84[ASN][1000 genomes]
rs9572236	0.87[ASN][1000 genomes]
rs9572237	0.87[ASN][1000 genomes]
rs9572238	0.90[ASN][1000 genomes]
rs9572242	0.94[CEU][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9572250	0.84[CEU][hapmap]
rs9592651	0.89[JPT][hapmap]
rs9599498	0.90[JPT][hapmap]
rs9599499	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv562207	chr13:70197635-70288258	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70276400-70294200	Weak transcription	Hela-S3	cervix

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