Variant report

Variant	rs9564590
Chromosome Location	chr13:70264577-70264578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11839809	0.90[JPT][hapmap]
rs12560587	0.93[ASN][1000 genomes]
rs12858377	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12864266	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12864567	0.94[ASN][1000 genomes]
rs12864670	0.95[ASN][1000 genomes]
rs12865145	0.95[ASN][1000 genomes]
rs12867754	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs17085275	0.80[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1932989	0.88[ASN][1000 genomes]
rs2152778	0.92[ASN][1000 genomes]
rs3909551	0.82[TSI][hapmap]
rs4494433	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58084677	0.86[ASN][1000 genomes]
rs71415694	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7323633	0.88[JPT][hapmap]
rs7339316	0.87[JPT][hapmap]
rs9317832	0.97[ASN][1000 genomes]
rs9317833	0.97[ASN][1000 genomes]
rs9317836	0.89[JPT][hapmap]
rs9529625	0.90[JPT][hapmap]
rs9542037	0.89[JPT][hapmap]
rs9542044	0.90[JPT][hapmap]
rs9564589	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9564592	0.90[JPT][hapmap]
rs9572219	0.89[ASN][1000 genomes]
rs9572220	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9572234	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9572235	0.94[ASN][1000 genomes]
rs9572236	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9572237	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9572238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9572242	0.90[JPT][hapmap];0.87[TSI][hapmap]
rs9572250	0.81[TSI][hapmap]
rs9592651	0.90[JPT][hapmap]
rs9599498	0.90[JPT][hapmap]
rs9599499	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv562207	chr13:70197635-70288258	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv482460	chr13:70240630-70419347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv900483	chr13:70254555-70464234	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70259400-70265000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:70259800-70264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:70259800-70264800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:70260000-70264600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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