Variant report

Variant	rs9572220
Chromosome Location	chr13:70218801-70218802
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11839809	0.89[JPT][hapmap]
rs12560587	0.86[ASN][1000 genomes]
rs12858377	0.85[ASN][1000 genomes]
rs12864266	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12864567	0.87[ASN][1000 genomes]
rs12864670	0.88[ASN][1000 genomes]
rs12865145	0.88[ASN][1000 genomes]
rs12867754	0.86[JPT][hapmap]
rs12870586	0.88[EUR][1000 genomes]
rs17085275	0.82[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1932989	0.84[ASN][1000 genomes]
rs2152778	0.86[ASN][1000 genomes]
rs4494433	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71415694	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7323633	0.83[JPT][hapmap]
rs7339316	0.81[JPT][hapmap]
rs9317832	0.84[ASN][1000 genomes]
rs9317833	0.84[ASN][1000 genomes]
rs9317836	0.84[JPT][hapmap]
rs9529625	0.89[JPT][hapmap]
rs9542037	0.84[JPT][hapmap]
rs9542044	0.90[JPT][hapmap]
rs9564580	0.87[EUR][1000 genomes]
rs9564589	0.82[ASN][1000 genomes]
rs9564590	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9564592	0.89[JPT][hapmap]
rs9572204	0.87[EUR][1000 genomes]
rs9572205	0.88[EUR][1000 genomes]
rs9572219	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9572234	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9572235	0.87[ASN][1000 genomes]
rs9572236	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9572237	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9572238	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9572242	0.89[JPT][hapmap]
rs9592651	0.89[JPT][hapmap]
rs9599498	0.85[JPT][hapmap]
rs9599499	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1049684	chr13:70126871-70333445	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv900481	chr13:70147851-70560731	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1054554	chr13:70159715-70502956	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900482	chr13:70186605-70383876	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv562207	chr13:70197635-70288258	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1837120	chr13:70209507-70425056	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70217600-70219200	Enhancers	GM12878-XiMat	blood
2	chr13:70218800-70219400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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