Variant report

Variant	rs10087033
Chromosome Location	chr8:125851582-125851583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125851467..125856602-chr8:125857773..125861438,7	K562	blood:
2	chr8:125849910..125851599-chr8:125869943..125871688,2	MCF-7	breast:
3	chr8:125848148..125849956-chr8:125851282..125854151,2	MCF-7	breast:
4	chr8:125851298..125853830-chr8:125862569..125864534,2	MCF-7	breast:
5	chr8:125847137..125849263-chr8:125851219..125853142,2	K562	blood:
6	chr8:125845588..125849228-chr8:125849730..125853632,5	MCF-7	breast:
7	chr8:125849543..125852163-chr8:125864125..125866129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249816	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12216828	0.95[ASN][1000 genomes]
rs12216831	0.95[ASN][1000 genomes]
rs12216874	0.95[ASN][1000 genomes]
rs3923682	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66657825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67259800	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72716983	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461109	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125846000-125852200	Weak transcription	K562	blood
2	chr8:125847000-125852400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:125847000-125853800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:125847200-125852400	Weak transcription	Left Ventricle	heart
5	chr8:125847200-125852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:125847200-125854800	Weak transcription	Esophagus	oesophagus
7	chr8:125847200-125855400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:125847400-125854000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:125847400-125854600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:125847400-125854600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:125847400-125855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:125847400-125860600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:125847600-125852600	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:125847800-125852400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:125848400-125854800	Weak transcription	Pancreas	Pancrea
16	chr8:125849400-125852400	Weak transcription	Placenta	Placenta
17	chr8:125850400-125853200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:125850600-125852800	Enhancers	Fetal Brain Male	brain
19	chr8:125850800-125851600	Enhancers	Brain Anterior Caudate	brain
20	chr8:125850800-125851600	Enhancers	Fetal Brain Female	brain
21	chr8:125850800-125851600	Enhancers	Right Atrium	heart
22	chr8:125850800-125851800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:125850800-125851800	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr8:125850800-125852400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:125850800-125852400	Enhancers	Brain Cingulate Gyrus	brain
26	chr8:125850800-125852800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:125850800-125853000	Enhancers	Brain Germinal Matrix	brain
28	chr8:125851000-125852800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:125851200-125851600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:125851200-125851800	Enhancers	Brain Angular Gyrus	brain
31	chr8:125851200-125851800	Enhancers	Brain Hippocampus Middle	brain
32	chr8:125851200-125851800	Enhancers	Right Ventricle	heart
33	chr8:125851200-125852800	Enhancers	Adipose Nuclei	Adipose
34	chr8:125851200-125853000	Enhancers	Lung	lung
35	chr8:125851200-125853200	Enhancers	Fetal Heart	heart
36	chr8:125851400-125851600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr8:125851400-125852000	Weak transcription	Spleen	Spleen
38	chr8:125851400-125852400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr8:125851400-125853400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links