Variant report

Variant	rs10087106
Chromosome Location	chr8:124629688-124629689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124576084..124576694-chr8:124628788..124629698,2	MCF-7	breast:
2	chr8:124618052..124619899-chr8:124628853..124631405,2	MCF-7	breast:
3	chr4:99390936..99391440-chr8:124628837..124629769,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10091012	0.85[AFR][1000 genomes]
rs10102755	0.97[AFR][1000 genomes]
rs17254069	0.85[AMR][1000 genomes]
rs17254421	0.85[AMR][1000 genomes]
rs17255071	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17255197	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17338552	0.85[AMR][1000 genomes]
rs17338860	0.85[AMR][1000 genomes]
rs17339357	0.85[AMR][1000 genomes]
rs17340040	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518561	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62518563	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62518564	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62520870	0.85[AMR][1000 genomes]
rs62520871	0.85[AMR][1000 genomes]
rs62520874	0.85[AMR][1000 genomes]
rs62520908	0.85[AMR][1000 genomes]
rs62520911	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62520913	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62520914	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62520917	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62520918	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520919	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520920	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520921	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520923	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62520924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62520926	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62520927	1.00[EUR][1000 genomes]
rs7827535	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7827608	0.95[EUR][1000 genomes]
rs7832861	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124610400-124630000	Weak transcription	Right Atrium	heart
2	chr8:124619200-124629800	Weak transcription	Ovary	ovary
3	chr8:124624000-124635200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:124625200-124634800	Weak transcription	Placenta	Placenta
5	chr8:124626000-124630400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:124626000-124631000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:124626000-124632000	Weak transcription	NHEK	skin
8	chr8:124626600-124631000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:124626600-124633200	Enhancers	Fetal Heart	heart
10	chr8:124626800-124632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:124627400-124632600	Enhancers	HSMM	muscle
12	chr8:124627400-124633000	Enhancers	HSMMtube	muscle
13	chr8:124628200-124632600	Enhancers	Fetal Muscle Leg	muscle
14	chr8:124628400-124630200	Enhancers	NH-A	brain
15	chr8:124628400-124632600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:124628400-124633000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:124628400-124633800	Enhancers	Osteobl	bone
18	chr8:124628600-124630000	Weak transcription	Psoas Muscle	Psoas
19	chr8:124628600-124632800	Enhancers	Fetal Stomach	stomach
20	chr8:124628800-124630000	Weak transcription	Right Ventricle	heart
21	chr8:124628800-124630200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:124628800-124630200	Enhancers	HMEC	breast
23	chr8:124629000-124630000	Weak transcription	Left Ventricle	heart
24	chr8:124629000-124630200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:124629000-124630200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:124629000-124630400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:124629000-124630400	Enhancers	Rectal Smooth Muscle	rectum
28	chr8:124629000-124630400	Enhancers	NHLF	lung
29	chr8:124629000-124630800	Enhancers	Fetal Lung	lung
30	chr8:124629200-124629800	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr8:124629200-124630400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr8:124629200-124631000	Weak transcription	NHDF-Ad	bronchial
33	chr8:124629200-124633000	Enhancers	Colon Smooth Muscle	Colon
34	chr8:124629200-124645400	Weak transcription	Aorta	Aorta
35	chr8:124629400-124631200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:124629600-124629800	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr8:124629600-124630000	Weak transcription	K562	blood
38	chr8:124629600-124630200	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr8:124629600-124630400	Flanking Active TSS	Stomach Smooth Muscle	stomach
40	chr8:124629600-124631600	Enhancers	Cortex derived primary cultured neurospheres	brain

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