Variant report

Variant	rs10091012
Chromosome Location	chr8:124623378-124623379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr8:124623015-124623426	K562	blood:	n/a	n/a
2	USF1	chr8:124623054-124623426	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124619293..124622384-chr8:124622665..124625911,4	MCF-7	breast:
2	chr8:124606691..124608207-chr8:124623300..124624802,2	MCF-7	breast:
3	chr8:124621170..124625679-chr8:124625859..124629573,5	K562	blood:
4	chr8:124621417..124623503-chr8:124631883..124634146,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10087106	0.85[AFR][1000 genomes]
rs10102755	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62520924	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612140	chr8:124604759-124738618	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032155	chr8:124609702-124739559	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124610400-124628000	Weak transcription	Aorta	Aorta
2	chr8:124610400-124630000	Weak transcription	Right Atrium	heart
3	chr8:124619200-124629800	Weak transcription	Ovary	ovary
4	chr8:124621400-124624000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:124621400-124624600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:124622000-124624000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:124622200-124624600	Weak transcription	Pancreas	Pancrea
8	chr8:124622600-124624600	Weak transcription	K562	blood
9	chr8:124623000-124624600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:124623200-124624600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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